Peptide-Based Approaches for Biomolecule Encapsulation, Storage, and Preservation: A Comprehensive Review

Authors

  • Abdulazizu Bala Department of Microbiology, Skyline University, Nigeria
  • Shehu-Alimi Elelu Department of Chemistry, Howard University, Washington DC, USA
  • Ganiyat Omotayo Ibrahim Department of Chemistry, Nottingham Trent University, UK
  • Idowu Afeez Temitope Department of Medicinal Research, Kaohsiung Medical University Hospital, Taiwan
  • Miracle Uwa Livinus Department of Biochemistry, Skyline University, Nigeria
  • Abdullahi Mustapha Yasir Department of Biological Sciences, Federal University Dustin-Ma, Nigeria
  • Musa Ojeba Innocent Department of Microbiology, Skyline University, Nigeria
  • Mustapha Abdulsalam Department of Microbiology, Skyline University, Nigeria

DOI:

https://doi.org/10.55006/biolsciences.2025.5204

Keywords:

Peptides, Biomolecule encapsulation, Biomolecule preservation, Storage stability, Biocompatibility

Abstract

Peptide-based encapsulation systems have gained significant attention in recent years as a promising strategy for the stabilization, storage, and preservation of biomolecules. These systems offer distinct advantages over traditional encapsulation methods due to the unique properties of peptides, such as biocompatibility, tunable structure, and the ability to form stable complexes with various biomolecules. This study provides a comprehensive overview of peptide-based approaches for encapsulating proteins, enzymes, nucleic acids, and other biomolecules, focusing on their mechanisms, design principles, and applications. The study explores the underlying physicochemical interactions between peptides and biomolecules, such as hydrogen bonding, electrostatic interactions, and hydrophobic forces, which are essential for achieving effective encapsulation and stabilization. Moreover, the study examines several types of peptide-based systems, including hydrogels, self-assembled structures, nanoparticles, and peptide coatings, highlighting their respective advantages, challenges, and current applications in drug delivery, enzyme preservation, vaccine storage, and diagnostics. This study also discusses the key challenges in scaling these systems for industrial use, such as cost-effectiveness, long-term stability, and biocompatibility, while identifying future research directions aimed at enhancing the performance of peptide-based systems. In particular, the integration of peptide encapsulation with nanotechnology and gene editing holds great promise for advancing therapeutic and diagnostic applications. Despite current limitations, peptide-based encapsulation is poised to play a transformative role in biopreservation, biotechnology, and medicine in the coming years.

Downloads

Download data is not yet available.

References

1. Mitchell, M.J.; Billingsley, M.M.; Haley, R.M.; Wechsler, M.E.; Peppas, N.A.; Langer, R. Engineering precision nanoparticles for drug delivery. Nat. Rev. Drug Discov. 2021, 20(2), 101–124.

2. Mitchell, M.J.; Billingsley, M.M.; Haley, R.M.; Wechsler, M.E.; Peppas, N.A.; Langer, R. Engineering precision nanoparticles for drug delivery. Nat. Rev. Drug Discov. 2021, 20(2), 101–124.

3. Liu, Q.; Xun, G.; Feng, Y. The state-of-the-art strategies of protein engineering for enzyme stabilization. Biotechnol. Adv. 2019, 37(4), 530–537.

4. Lakal, N.; Shehri, A.H.; Brashler, K.W.; Wankhede, S.P.; Morse, J.; Du, X. Sensing technologies for condition monitoring of oil pump in harsh environments. Sens. Actuators A Phys. 2022, 346, 113864.

5. Kumar, R.; Srivastava, V.; Baindara, P.; Ahmad, A. Thermostable vaccines: An innovative concept in vaccine development. Expert Rev. Vaccines 2022, 21(6), 811–824.

6. Sheldon, R.A.; Brady, D. Streamlining design, engineering, and applications of enzymes for sustainable biocatalysis. ACS Sustain. Chem. Eng. 2021, 9(24), 8032–8052.

7. Abdulsalam, M.; Amina, A.A.; Ummulkhair, A.Y.; Zainab, H.F. Advances in understanding the interplay between Mutagenesis and DNA repair: Implications for Genomic Stability and Evolution. Int. J. Sci. Acad. Res. 2023, 4(10), 6428–6438.

8. Feng, M.; Xing, C.; Jin, Y.; Feng, X.; Zhang, Y.; Wang, B. Reticular Chemistry for Enhancing Bioentity Stability and Functional Performance. J. Am. Chem. Soc. 2024.

9. Souto, E.B.; Blanco-Llamero, C.; Krambeck, K.; Kiran, N.S.; Yashaswini, C.; Postwala, H.; Maheshwari, R. Regulatory Insights into Nanomedicine and Gene Vaccine Innovation: Safety Assessment, Challenges, and Regulatory Perspectives. Acta Biomater. 2024.

10. Akbarian, M.; Khani, A.; Eghbalpour, S.; Uversky, V.N. Bioactive peptides: Synthesis, sources, applications, and proposed mechanisms of action. Int. J. Mol. Sci. 2022, 23(3), 1445.

11. Hu, M.; Li, X.; You, Z.; Cai, R.; Chen, C. Physiological barriers and strategies of lipid‐based nanoparticles for nucleic acid drug delivery. Adv. Mater. 2024, 36(22), 2303266.

12. Alves, P.M.; Barrias, C.C.; Gomes, P.; Martins, M.C.L. How can biomaterial-conjugated antimicrobial peptides fight bacteria and be protected from degradation? Acta Biomater. 2024, 181, 98–116.

13. Wells, C.M.; Harris, M.; Choi, L.; Murali, V.P.; Guerra, F.D.; Jennings, J.A. Stimuli-responsive drug release from smart polymers. J. Funct. Biomater. 2019, 10(3), 34.

14. Pisoschi, A.M.; Pop, A.; Iordache, F.; Stanca, L.; Predoi, G.; Serban, A.I. Oxidative stress mitigation by antioxidants-an overview of their chemistry and influences on health status. Eur. J. Med. Chem. 2021, 209, 112891.

15. Tian, Y.; Tirrell, M.V.; LaBelle, J.L. Harnessing the therapeutic potential of biomacromolecules through intracellular delivery of nucleic acids, peptides, and proteins. Adv. Healthc. Mater. 2022, 11(12), 2102600.

16. Abdulsalam, M.; Hamisu, A.A.; Ahmad, A.M.; Wakili, F.B.; Annu, F.S.; Garba, M.M. Microbiome Dynamics and Strategic Management Strategies: Exploring Synergies between Integrative Medicine Modalities and Microbial Balance. Biol. Sci. 2024, 4(3), 725–735.

17. Mahto, A.K.; Kumari, S.; Akbar, S.; Paroha, S.; Sahoo, P.K.; Kumar, A.; Dewangan, R.P. Peptide-Based Therapeutics and Drug Delivery Systems. In Drugs and a Methodological Compendium: From bench to bedside; Springer Nature Singapore: Singapore, 2023; pp. 173–211.

18. Uddin, M.N.; Roni, M.A. Challenges of storage and stability of mRNA-based COVID-19 vaccines. Vaccines 2021, 9(9), 1033.

19. Tan, C.; Wang, J.; Sun, B. Biopolymer-liposome hybrid systems for controlled delivery of bioactive compounds: Recent advances. Biotechnol. Adv. 2021, 48, 107727.

20. Varanko, A.; Saha, S.; Chilkoti, A. Recent trends in protein and peptide-based biomaterials for advanced drug delivery. Adv. Drug Deliv. Rev. 2020, 156, 133–187.

21. Röder, M.; Chong, K.; Thornley, P. The future of residue-based bioenergy for industrial use in Sub-Saharan Africa. Biomass Bioenergy 2022, 159, 106385.

22. Kashyap, S.; Pal, V.K.; Mohanty, S.; Roy, S. Exploring a Solvent Dependent Strategy to Control Self‐Assembling Behavior and Cellular Interaction in Laminin‐Mimetic Short Peptide-based Supramolecular Hydrogels. ChemBioChem 2024, 25(8), e202300835.

23. Zhang, K.; Feng, Q.; Fang, Z.; Gu, L.; Bian, L. Structurally dynamic hydrogels for biomedical applications: pursuing a fine balance between macroscopic stability and microscopic dynamics. Chem. Rev. 2021, 121(18), 11149–11193.

24. Varanko, A.; Saha, S.; Chilkoti, A. Recent trends in protein and peptide-based biomaterials for advanced drug delivery. Adv. Drug Deliv. Rev. 2020, 156, 133–187.

25. Bakhtiary, N.; Ghalandari, B.; Ghorbani, F.; Varma, S.N.; Liu, C. Advances in peptide-based hydrogel for tissue engineering. Polymers 2023, 15(5), 1068.

26. Pandey, T.; Pandey, V. Microbial assistance in nano-carrier development: Innovative strategies in drug delivery. J. Drug Deliv. Sci. Technol. 2024, 105607.

27. Talreja, S.; Tiwari, S. Supramolecular chemistry: unveiling the fascinating world of non-covalent interactions and complex assemblies. J. Pharm. Pharmacol. Res. 2023, 7, 133–139.

28. Hekmat, A.; Kostova, I.; Saboury, A.A. Application of metallic nanoparticles-amyloid protein supramolecular materials in tissue engineering and drug delivery: Recent progress and perspectives. Colloids Surf. B Biointerfaces 2024, 114185.

29. Jomova, K.; Alomar, S.Y.; Alwasel, S.H.; Nepovimova, E.; Kuca, K.; Valko, M. Several lines of antioxidant defense against oxidative stress: antioxidant enzymes, nanomaterials with multiple enzyme-mimicking activities, and low-molecular-weight antioxidants. Arch. Toxicol. 2024, 98(5), 1323–1367.

30. Abdulsalam, M.; Salihu, A.T.; Usman, H.Y.; Usman, M.Y. Protein Biosynthesis in Microorganisms: Mechanisms, Regulation, and Biotechnological Applications. World J. Adv. Res. Rev. 2024, 21(1), 869–881.

31. Assiri, A.A.; Glover, K.; Mishra, D.; Waite, D.; Vora, L.K.; Thakur, R.R.S. Block copolymer micelles as ocular drug delivery systems. Drug Discov. Today 2024, 104098.

32. Singh, B.; Day, C.M.; Abdella, S.; Garg, S. Alzheimer's disease current therapies, novel drug delivery systems, and future directions for better disease management. J. Control. Release 2024, 367, 402–424.

33. Abdulsalam, M.; Tiamiyu, B.B.; Abdulrazaq, I.; Salam, O.L. Comparative Antimicrobial Properties of a Consortium of Nauclea latifolia Sm. and Ocimum gratissium L. Extracts with Their CuO Nanoparticle Multiplexes. Biol. Sci. 2023, 3(1), 386–393.

34. Yu, W.; Guo, X.; Li, Q.; Li, X.; Wei, Y.; Shao, C.; Shan, A. Revolutionizing Antimicrobial Biomaterials: Integrating an Enzyme Degradation-Resistant Sequence into Self-Assembled Nanosystems to Overcome Stability Limitations of Peptide-Based Drugs. Adv. Fiber Mater. 2024, 1–24.

35. Zhuo, Y.; Zeng, H.; Su, C.; Lv, Q.; Cheng, T.; Lei, L. Tailoring biomaterials for vaccine delivery. J. Nanobiotechnol. 2024, 22(1), 480.

36. Fu, C.; Wang, Z.; Zhou, X.; Hu, B.; Li, C.; Yang, P. Protein-based bioactive coatings: from nanoarchitectonics to applications. Chem. Soc. Rev. 2024.

37. Abdulsalam, M. Exploring the Therapeutic Promise of Cationic Antibacterial Peptides. Biol. Sci. 2024, 4(3), 692–700.

38. Fu, C.; Wang, Z.; Zhou, X.; Hu, B.; Li, C.; Yang, P. Protein-based bioactive coatings: from nanoarchitectonics to applications. Chem. Soc. Rev. 2024.

39. Abdulsalam, M.; Musa, I.O.; Livinus, M.U.; Elelu, S.A.; Ibrahim, G.O.; Salami, O.L.; Pal, S.K. Blue Bioeconomy and Biomedical Innovation. In Marine Bioprospecting for Sustainable Blue-bioeconomy; Springer Nature Switzerland: Cham, 2024; pp. 143–157.

40. Innocent, M.O.; Patrick, O.I.; Job, O.S.; Abdulsalam, M.; Adams, M.; Sikirula, A.; Oluwafemi, A.O.; Ifeoluwa, I.K.; Hephzibah, A. Introduction to Nanotoxicology. In Environmental Nanotoxicology: Combatting the Minute Contaminants; Springer Nature Switzerland: Cham, 2024; pp. 1–22.

41. Yong, J.; Hakobyan, K.; Xu, J.; Mellick, A.S.; Whitelock, J.; Liang, K. Comparison of protein quantification methods for protein encapsulation with ZIF‐8 metal‐organic frameworks. Biotechnol. J. 2023, 18(11), 2300015.

42. Nunes, R.; Pereira, B.D.A.; Cerqueira, M.A.; Silva, P.; Pastrana, L.M.; Vicente, A.A.; Bourbon, A.I. Lactoferrin-based nanoemulsions to improve the physical and chemical stability of omega-3 fatty acids. Food Funct. 2020, 11(3), 1966–1981.

43. Langlois, N.I.; Clark, H.A. Characterization of DNA nanostructure stability by size exclusion chromatography. Anal. Methods 2022, 14(10), 1006–1014.

44. Abdulsalam, M.; Natour, S.; Rabiu, I.B.; Abdulazeez, M. Microbial Magic: Decoding the Impact of Hypoxia on Exercise Physiology through Microbiota Dynamics. Biol. Sci. 2024, 4(3), 736–745.

45. Angelerou, M.G.F.; Markus, R.; Paraskevopoulou, V.; Foralosso, R.; Clarke, P.; Alvarez, C.V.; Marlow, M. Mechanistic investigations into the encapsulation and release of small molecules and proteins from a supramolecular nucleoside gel in vitro and in vivo. J. Control. Release 2020, 317, 118–129.

46. Roy, S.; Srinivasan, V.R.; Arunagiri, S.; Mishra, N.; Bhatia, A.; Shejale, K.P.; Anand, B.G. Molecular insights into the phase transition of lysozyme into amyloid nanostructures: Implications of therapeutic strategies in diverse pathological conditions. Adv. Colloid Interface Sci. 2024, 103205.

47. Wang, J.; Chen, D.; Ho, E.A. Challenges in the development and establishment of exosome-based drug delivery systems. J. Control. Release 2021, 329, 894–906.

48. Siddiqui, S.A.; Singh, S.; Bahmid, N.A.; Mehany, T.; Shyu, D.J.; Assadpour, E.; Jafari, S.M. Release of encapsulated bioactive compounds from active packaging/coating materials and its modeling: a systematic review. Colloids Interfaces 2023, 7(2), 25.

49. Nazir, H.; Batool, M.; Osorio, F.J.B.; Isaza-Ruiz, M.; Xu, X.; Vignarooban, K.; Kannan, A.M. Recent developments in phase change materials for energy storage applications: A review. Int. J. Heat Mass Transf. 2019, 129, 491–523.

50. Castro, K.C.D.; Costa, J.M.; Campos, M.G.N. Drug-loaded polymeric nanoparticles: a review. Int. J. Polym. Mater. Polym. Biomater. 2022, 71(1), 1–13.

51. Hayes, G.; Laurel, M.; MacKinnon, D.; Zhao, T.; Houck, H.A.; Becker, C.R. Polymers without petrochemicals: sustainable routes to conventional monomers. Chem. Rev. 2022, 123(5), 2609–2734.

52. Saheed, Y.K.; Balogun, B.F.; Odunayo, B.J.; Abdulsalam, M. Microarray gene expression data classification via Wilcoxon sign rank sum and novel Grey Wolf optimized ensemble learning models. IEEE/ACM Trans. Comput. Biol. Bioinform. 2023, 20(6), 3575–3587.

53. Aguilar-Toalá, J.E.; Quintanar-Guerrero, D.; Liceaga, A.M.; Zambrano-Zaragoza, M.L. Encapsulation of bioactive peptides: A strategy to improve the stability, protect the nutraceutical bioactivity, and support their food applications. RSC Adv. 2022, 12(11), 6449–6458.

54. Musa, I.O.; Samuel, J.O.; Adams, M.; Abdulsalam, M.; Abdulazeez, M.; Muhammad, M.S.; Akande, S.A. Natural Contaminant of Infant Food: Case Study. In Emerging Contaminants in Food and Food Products; CRC Press: Boca Raton, 2024; pp. 151–161.

55. Haggag, Y.; Abu Ras, B.; El-Tanani, Y.; Tambuwala, M.M.; McCarron, P.; Isreb, M.; El-Tanani, M. Co-delivery of a RanGTP inhibitory peptide and doxorubicin using dual-loaded liposomal carriers to combat chemotherapeutic resistance in breast cancer cells. Expert Opin. Drug Deliv. 2020, 17(11), 1655–1669.

56. Guan, T.; Li, J.; Chen, C.; Liu, Y. Self‐assembling peptide‐based hydrogels for wound tissue repair. Adv. Sci. 2022, 9(10), 2104165.

57. Ramesh, A.; Harani Devi, P.; Chattopadhyay, S.; Kavitha, M. Commercial applications of microbial enzymes. In Microbial Enzymes: Roles and Applications in Industries; Springer: Cham, 2020; pp. 137–184.

58. Fan, J.; Jin, S.; Gilmartin, L.; Toth, I.; Hussein, W.M.; Stephenson, R.J. Advances in infectious disease vaccine adjuvants. Vaccines 2022, 10(7), 1120.

59. Liu, X.; Zhang, Q.; Knoll, W.; Liedberg, B.; Wang, Y. Rational design of functional peptide–gold hybrid nanomaterials for molecular interactions. Adv. Mater. 2020, 32(37), 2000866.

60. Musa, I.O.; Auwal, A.I.; Abdulsalam, M.; Livinus, M.U.; Abdulhakeem, A.I.; Muhammed, A.; Muhammad, A.S. Microbial Bioprospecting Products of Marine Economy. In Marine Bioprospecting for Sustainable Blue-bioeconomy; Springer Nature Switzerland: Cham, 2024; pp. 181–204.

61. Large, D.E.; Soucy, J.R.; Hebert, J.; Auguste, D.T. Advances in receptor‐mediated, tumor‐targeted drug delivery. Adv. Ther. 2019, 2(1), 1800091.

62. Deo, S.; Turton, K.L.; Kainth, T.; Kumar, A.; Wieden, H.J. Strategies for improving antimicrobial peptide production. Biotechnol. Adv. 2022, 59, 107968.

63. Saheed, Y.K.; Salau-Ibrahim, T.T.; Abdulsalam, M.; Adeniji, I.A.; Balogun, B.F. Modified bi-directional long short-term memory and hyperparameter tuning of supervised machine learning models for cardiovascular heart disease prediction in the mobile cloud environment. Biomed. Signal Process. Control 2024, 94, 106319.

64. Lombardo, D.; Calandra, P.; Pasqua, L.; Magazù, S. Self-assembly of organic nanomaterials and biomaterials: The bottom-up approach for functional nanostructures formation and advanced applications. Materials 2020, 13(5), 1048.

65. Mazo, A.R.; Allison-Logan, S.; Karimi, F.; Chan, N.J.A.; Qiu, W.; Duan, W.; Qiao, G.G. Ring-opening polymerization of α-amino acids: advances in synthesis, architecture, and applications of polypeptides and their hybrids. Chem. Soc. Rev. 2020, 49(14), 4737–4834.

66. Pagar, A.D.; Patil, M.D.; Flood, D.T.; Yoo, T.H.; Dawson, P.E.; Yun, H. Recent advances in biocatalysis with chemical modification and expanded amino acid alphabet. Chem. Rev. 2021, 121(10), 6173–6245.

67. Mookherjee, N.; Anderson, M.A.; Haagsman, H.P.; Davidson, D.J. Antimicrobial host defense peptides: functions and clinical potential. Nat. Rev. Drug Discov. 2020, 19(5), 311–332.

68. Delfi, M.; Sartorius, R.; Ashrafizadeh, M.; Sharifi, E.; Zhang, Y.; De Berardinis, P.; Makvandi, P. Self-assembled peptide and protein nanostructures for anti-cancer therapy: Targeted delivery, stimuli-responsive devices, and immunotherapy. Nano Today 2021, 38, 101119.

69. Abdulsalam, M.; Fatima, Z.Y.U.; Hasiya, U.A.; Ummulkhuthum, A.T.; Aisha, W.N.; Muhammad, F.Y. Deciphering the Genetic Code: Mechanisms, Evolution, and Implications for Biotechnology. World J. Adv. Res. Rev. 2024, 21(1), 858–868.

70. Rossino, G.; Marchese, E.; Galli, G.; Verde, F.; Finizio, M.; Serra, M.; Collina, S. Peptides as therapeutic agents: challenges and opportunities in the green transition era. Molecules 2023, 28(20), 7165.

71. Daniotti, S.; Re, I. Marine biotechnology: Challenges and development market trends for the enhancement of biotic resources in industrial pharmaceutical and food applications. A statistical analysis of scientific literature and business models. Mar. Drugs 2021, 19(2), 61.

72. Wibowo, D.; Zhao, C.X. Recent achievements and perspectives for large-scale recombinant production of antimicrobial peptides. Appl. Microbiol. Biotechnol. 2019, 103, 659–671.

73. Dumpa, N.; Goel, K.; Guo, Y.; McFall, H.; Pillai, A.R.; Shukla, A.; Murthy, S.N. Stability of vaccines. AAPS PharmSciTech 2019, 20, 1–11.

74. Butreddy, A.; Janga, K.Y.; Ajjarapu, S.; Sarabu, S.; Dudhipala, N. Instability of therapeutic proteins—An overview of stresses, stabilization mechanisms, and analytical techniques involved in Lyophilized proteins. Int. J. Biol. Macromol. 2021, 167, 309–325.

75. Perry, S.L.; McClements, D.J. Recent advances in encapsulation, protection, and oral delivery of bioactive proteins and peptides using colloidal systems. Molecules 2020, 25(5), 1161.

76. Wells, C.M.; Harris, M.; Choi, L.; Murali, V.P.; Guerra, F.D.; Jennings, J.A. Stimuli-responsive drug release from smart polymers. J. Funct. Biomater. 2019, 10(3), 34.

77. Delfi, M.; Sartorius, R.; Ashrafizadeh, M.; Sharifi, E.; Zhang, Y.; De Berardinis, P.; Makvandi, P. Self-assembled peptide and protein nanostructures for anti-cancer therapy: Targeted delivery, stimuli-responsive devices, and immunotherapy. Nano Today 2021, 38, 101119.

Downloads

Published

02-06-2025
CITATION

How to Cite

Bala, A., Elelu, S.-A., Ibrahim, G. O., Temitope, I. A., Livinus, M. U., Yasir, A. M., … Abdulsalam, M. (2025). Peptide-Based Approaches for Biomolecule Encapsulation, Storage, and Preservation: A Comprehensive Review. Biological Sciences, 5(2), 916–931. https://doi.org/10.55006/biolsciences.2025.5204

Similar Articles

1 2 > >> 

You may also start an advanced similarity search for this article.

Most read articles by the same author(s)

1 2 > >>